Murata's Publications

  1. Kobayashi N, Inano K, Sasahara K, Sato T, Miyazawa K, Fukuma T, Hecht M, Song C, Murata K, & Arai R (2018) Self-Assembling Supramolecular Nanostructures Constructed from de Novo Extender Protein Nanobuilding Blocks. ACS Synth Biol 7, 1381-1394. doi: 10.1021/acssynbio.8b00007 Pub Med
  2. Uchihashi T, Watanabe Y, Nakazaki Y, Yamasaki T, Watanabe H, Maruno T, Ishii K, Uchiyama S, Song C, Murata K, Iino R, & Ando T (2018) Dynamic Structural States of ClpB Involved in Its Disaggregation Function. Nature Commun 9, 2147. doi:10.1038/s41467-018-04587-w Pub Med
  3. Asare KK, Sakaguchi M, Lucky AB, Asada M, Miyazaki S, Katakai Y, Kawai S, Song S, Murata K, Yahata K, & Kaneko O (2018) The Plasmodium knowlesi MAHRP2 ortholog localizes to structures connecting Sinton Mulligan's clefts in the infected erythrocyte. Parasitol Int 67, 481-492. doi: https://doi.org/10.1016/j.parint.2018.04.005 Pub Med
  4. 村田和義 (2018) 超高圧電子顕微鏡 ライフサイエンス顕微鏡学ハンドブック (山科正平・高田邦昭 責任編集), pp.150-154 朝倉書店 ISBN978-4-254-31094-8
  5. 岡本健太,村田和義(2018)巨大ウイルスの構造解析:クライオ電子顕微鏡の新たな挑戦 実験医学 36(8), P.1344-1348 羊土社
  6. 宋 致宖, 村田和義(2018)クライオ電子顕微鏡によるタンパク質の動的構造解析 J Comp Chem, Japan 17(1), 38-45.
  7. Okamoto K, Miyazaki N, Reddy HKN., Hantke MF, Maia FRNC., Larsson DSD, Abergel C, Claverie JM, Hajdu J, Murata K, & Svenda M (2018) Cryo-EM structure of a Marseilleviridae virus particle reveals a large internal microassembly. Virology 516, 239-245. doi:10.1016/j.virol.2018.01.021 Pub Med
  8. Nakao A, Miyazaki N, Ohira K, Hagihara H, Takagi T, Usuda N, Ishii S, Murata K, & Miyakawa T (2017) Immature morphological properties in subcellular-scale structures in the dentate gyrus of Schnurri-2 knockout mice: a model for schizophrenia and intellectual disability. Mol Brain 10:60. doi: 10.1186/s13041-017-0339-2 Pub Med
  9. Nakamura A, Tasaki T, Okuni Y, Song C, Murata K, Kozai T, Hara M, Sugimoto H, Suzuki K, Watanabe T, Uchihashi T, Noji H, & Iino R (2017) Rate constants, processivity, and productive binding ratio of chitinase A revealed by single-molecule analysis. Phys Chem Chem Phys 20(5), 3844. doi: 10.1039/c8cp90024h. Pub Med
  10. Okamoto K, Miyazaki N, Song C, Maia FRNC, Reddy HKN, Abergel C, Claverie J-M, Hajdu J, Svenda M, & Murata K (2017) Structural variability and complexity of the giant Pithovirus sibericum particle revealed by high-voltage electron cryo-tomography and energy-filtered electron cryo-microscopy. Sci Rep 7, 13291. doi:10.1038/s41598-017-13390-4 Pub Med
  11. Satoh T, Song C, Zhu T, Toshimori T, Murata K, Hayashi Y, Kamikubo H, Uchihashi T, & Kato K (2017) Visualisation of a flexible modular structure of the ER folding-sensor enzyme UGGT. Sci Rep 7:12142 doi: 10.1038/s41598-017-12283-w. Pub Med
  12. Murata K & Wolf M (2017) Cryo-electron microscopy for structural analysis of dynamic biological macromolecules. Biochim Biophys Acta 1862(2), 324-334. doi: 10.1016/j.bbagen.2017.07.020Pub Med
  13. Conley M, Emmott E, Orton R, Taylor D, Carneiro DG, Murata K, Goodfellow IG, Hansman GS, & Bhella D (2017) Vesivirus 2117 capsids more closely resemble sapovirus and lagovirus particles than other known vesivirus structures. J Gen Virol 98, 68–76. doi: 10.1099/jgv.0.000658 Pub Med
  14. Sai K, Wang S, Kaito A, Fujiwara T, Maruo T, Itoh Y, Miyata M, Sakakibara S, Miyazaki N, Murata K, Yamaguchi Y, Haruta T, Nishioka H, Motojima Y, Komura M, Kimura K, Mandai K, Takai Y, & Mizoguchi A (2017) Multiple roles of afadin in the ultrastructural morphogenesis of mouse hippocampal mossy fiber synapses. J Comp Neurol 525:2719–2734. doi: 10.1002/cne.24238. Pub Med
  15. Song C, Murata K, & Suzaki T (2017) Intracellular symbiosis of algae with possible involvement of mitochondrial dynamics. Sci Rep 7, 1221. doi: 10.1038/s41598-017-01331-0. Pub Med
  16. Murata K, Zhang Q, Gerardo Galaz-Montoya J, Fu C, Coleman ML, Osburne MS, Schmid MF, Sullivan MB, Chisholm SW, & Chiu W (2017) Visualizing Adsorption of Cyanophage P-SSP7 onto Marine Prochlorococcus. Sci Rep 7, 44176. doi: 10.1038/srep44176 . Pub Med
  17. Ichimura K, Kakuta S, Kawasaki Y, Miyaki T, Nonami T, Miyazaki N, Nakao T, Enomoto S, Arai S, Koike M, Murata K, & Sakai T. (2017) Morphological process of podocyte development revealed by block- face scanning electron microscopy. J Cell Sci 130, 132–142. doi: 10.1242/jcs.187815. Pub Med
  18. Watanabe T, Kobayashi C, Song C, Murata K, Kureha T, Suzuki D (2016) Impact of Spatial Distribution of Charged Groups in Core Poly( N ‑ isopropylacrylamide)-Based Microgels on the Resultant Composite Structures Prepared by Seeded Emulsion Polymerization of Styrene.Langmuir 32:12760–12773. Pub Med
  19. Murata K, Hagiwara S, Kimori Y, & Kaneko Y (2016) Ultrastructure of compacted DNA in cyanobacteria by high-voltage cryo-electron tomography.Sci Rep, 6: 34934. Pub Med
  20. Haga K, Fujimoto A, Takai-Todaka R , Miki M, Doan YH, Murakami K, Yokoyama M, Murata K, Nakanishi A, & Katayama K. (2016) Functional receptor molecules CD300lf and CD300ld within the CD300 family enable murine noroviruses to infect cells. Proc Natl Acad Sci USA 113(41), E6248–E6255. Pub Med
  21. Okamoto K, Miyazaki N, Larsson DS, Kobayashi D, Svenda M, Mühlig K, Maia FR, Gunn LH, Isawa H, Kobayashi M, Sawabe K, Murata K, & Hajdu J. (2016) The infectious particle of insectborne totivirus-like Omono River virus has raised ridges and lacks fibre complexes. Sci Rep, 6: 33170. Pub Med
  22. Negishi T, Miyazaki N, Murata K, Yasuo H, & Ueno N. (2016) Physical association between a novel plasma-membrane structure and centrosome orients cell division. Elife, 5, e16550. Pub Med
  23. Yamaguchi M, Yamada H, Higuchi K, Yamamoto Y, Arai S, Murata K, Mori Y, Furukawa H, Uddin MS & Chibana H (2016) High-voltage electron microscopy tomography and structome analysis of unique spiral bacteria from the deep sea. Microscopy 65, 363-369. Pub Med
  24. Takeuchi M, Karahara I, Kajimura N, Takaoka A, Murata K, Misaki K, Yonemura S, Staehelin LA & Mineyuki Y. (2016). Single microfilaments mediate the early steps of microtubule bundling during preprophase band formation in onion cotyledon epidermal cells. Mol Biol Cell, 27(11):1809-1820. Pub Med
  25. Oshima A, Matsuzawa T, Murata K, Tani K, & Fujiyoshi Y. (2016). Hexadecameric structure of an invertebrate gap junction channel. J Mol Biol, 428(6):1227-1236. Pub Med
  26. Kaji T, Kakui K, Miyazaki N, Murata K, & A R Palmer (2016). Mesoscale morphology at nanoscale resolution: serial block-face scanning electron microscopy reveals fine 3D detail of a novel silk spinneret system in a tube-building tanaid crustacean. Front Zool, 13:14. Pub Med
  27. Kobayashi C, Watanabe T, Murata K, Kureha T, & Suzuki D. (2016). Localization of Polystyrene Particles on the Surface of Poly(N-isopropylacrylamide-co-methacrylic acid) Microgels Prepared by Seeded Emulsion Polymerization of Styrene. Langmuir, 32(6): 1429-1439. Pub Med
  28. Sakaguchi M, Miyazaki N, Fujioka H, Kaneko O, Murata K.(2016). Three-dimensional analysis of morphological changes in the malaria parasite infected red blood cell by serial block-face scanning electron microscopy. J Struct Biol, 193(3): 162–171. Pub Med
  29. 宮崎直幸,村田和義 (2015). Serial Block-Face SEM(SBF-SEM)による細胞小器官の3次元形態観察 Plant Morphology, 27: 9-13.
  30. Miyazaki N, Taylor D W, Hansman G S, & Murata K. (2015). Antigenic and cryo-electron microscopy structure analysis of a chimeric sapovirus capsid. J Virol, 90(5): 2664-2675. Pub Med
  31. Watanabe M, Suzuki Y, Uchida K, Miyazaki N, Murata K, Matsumoto S, Kakizaki H, & Tominaga M. (2015). Trpm7 Protein Contributes to Intercellular Junction Formation in Mouse Urothelium. J Biol Chem 290(50): 29882-29892. Pub Med
  32. Satoh K, Takanami K, Murata K, Kawata M, Sakamoto T & Sakamoto H. (2015). Three-dimensional visualization of multiple synapses in thick sections using high-voltage electron microscopy in the rat spinal cord. Data Br 4 : 566–570. Pub Med
  33. Satoh K, Takanami K, Murata K, Kawata M, Sakamoto T, & Sakamoto H. (2015). Effective synaptome analysis of itch-mediating neurons in the spinal cord : A novel immunohistochemical methodology using high-voltage electron microscopy. Neurosci Let 599 : 86–91. Pub Med
  34. Ichimura K, Miyazaki N, Sadayama S, Murata K, Koike M, Nakamura K, Ohta K, & Sakai T (2015). Three-dimensional architecture of podocytes revealed by block-face scanning electron microscopy. Sci Rep 5:8993. Pub Med
  35. Murata K, Esaki M, Ogura T, Arai S, Yamamoto Y, & Tanaka N. (2014). Whole-Cell Imaging of the Budding Yeast Saccharomyces cerevisiae by High-Voltage Scanning Transmission Electron Tomography. Ultramicroscopy, 146: 39-45. Pub Med
  36. Miyazaki N, Esaki M, Ogura T, & Murata K. (2014). Serial block-face scanning electron microscopy for three-dimensional analysis of morphological changes in mitochondria regulated by Cdc48p/p97 ATPase. J Struct Biol, 187: 187-93. Pub Med
  37. Yoshioka-Nishimura M, Nanba D, Takaki T, Ohba C, Tsumura N, Morita N, Sakamoto H, Murata K & Yamamoto Y. (2014). Quality Control of Photosystem II: Direct Imaging of the Changes in the Thylakoid Structure and Distribution of FtsH Proteases in Spinach Chloroplasts under Light Stress. Plant and Cell Physiology, 55: 1255-65. Pub Med
  38. 村田和義(2014)(共著)「超高圧電子顕微鏡による分析」 マイクロビーム アナリシス・ハンドブック 5.1.3, P.459-464 オーム社
  39. 村田和義(2014)電子顕微鏡によるバイオイメージング 画像ラボ 25(4): 6-13 日本工業出版
  40. Wu Y, Wang C, Chen Y, Tu I, Miyazaki N, Murata K, Nagayama K, Chang W. (2013). Zernike phase contrast cryo-electron microscopy reveals 100 kDa component in both symmetric and asymmetric protein complexes. J. Physics D 46: 494008.
  41. Kazuyoshi Murata (2013) (共著)「Electron Crystallography of 2D Crystals」 Encyclopedia of Biophysics, Editor Gordon C. K. Roberts, ISBN: 978-3-642-16711-9, Springer Berlin Heidelberg
  42. 村田和義(2013)電子顕微鏡によるバイオイメージング 映像情報メディア学会誌 67(9), P.748-752 映像情報メディア学会
  43. 宮崎直幸、村田和義(2013)電子直接検出カメラ(direct electron detector)のTEM への応用 顕微鏡 48(1): 52-60 日本顕微鏡学会
  44. Kumoi K, Satoh T, Murata K, Hiromoto T, Mizushima T, Kamiya Y, Noda M, Uchiyama S, Yagi H & Kato K. (2013). An archaeal homolog of proteasome assembly factor functions as a proteasome activator. PloS one 8: e60294. Pub Med
  45. Oti T, Satoh K, Saito K, Murata K, Kawata M, Sakamoto T & Sakamoto H. (2012) Three-dimensional evaluation of the spinal local neural network revealed by the high-voltage electron microscopy: a double immunohistochemical study. Histochemistry and cell biology. 138: 693-697. Pub Med
  46. Hansman G, Taylor D, McLellan J, Smith T, Georgiev I, Tame J, Park SY, Yamazaki M, Gondaira F, Miki M, Katayama K, Murata K* & Kwong P*. (2012) Structural basis for broad detection of genogroup II noroviruses by a monoclonal antibody that binds to a site occluded in the viral particle. J Virol 86: 3635-3646. *Corresponding authors Pub Med
  47. Rochat RH, Liu X, Murata K, Nagayama K, Rixon FJ, Chiu W (2011) Seeing the portal in herpes simplex virus type 1 B capsids. J Virol 85(4) : 1871-1874. Pub Med
  48. 村田和義(2011)電子顕微鏡による生体分子イメージングの現在 最新医学 66(10) : 107-114.
  49. 村田和義、重本隆一(2011)医学・生物学用超高圧電子顕微鏡 顕微鏡 46(3) : 170-174.
  50. Yip CK, Murata K, Walz T, Sabatini DM & Kang SA. (2010). Structure of the human mTOR complex I and its implications for rapamycin inhibition. Mol Cell 38 : 768-774.Pub Med
  51. Murata K, Nishimura S, Kuniyasu A, & Nakayama H (2010) Three-dimensional structure of the alpha1-beta complex in the skeletal muscle dihydropyridine receptor by single-particle electron microscopy. J Electron Microsc 59(3) : 215-226. Pub Med
  52. Murata K, Liu X, Danev R, Jakana J, Schmid MF, King J, Nagayama K, & Chiu W (2010) Zernike Phase Contrast Cryo-Electron Microscopy and Tomography for Structure Determination at Nanometer and Sub-Nanometer Resolutions. Structure 18(8) : 903-912. Pub Med
  53. Liu X, Zhang Q, Murata K, Baker ML, Sullivan MB, Fu C, Dougherty MT, Schmid MF, Osburne MS, Chisholm SW, & Chiu W (2010) Structural changes in a marine podovirus associated with release of its genome into Prochlorococcus. Nat Struct Mol Biol 17(7) : 830-836. Pub Med
  54. 村田和義、Qinfen Zhang、Xiangan Liu、Michael Schmid、Wah Chiu(2010)電子線トモグラフィー単粒子解析によるT7様ウイルスのシアノバクテリアへの感染過程の解析.顕微鏡 46(2) : 114-118.
  55. Iwasaki K, Miyazaki N, Hammar L, Zhu Y, Omura T, Wu B, Sjöborg F, Yonekura K, Murata K, Namba K, Caspar DL, Fujiyoshi Y, & Cheng RH (2008) Pleomorphic configuration of the trimeric capsid proteins of Rice dwarf virus that allows formation of both the outer capsid and tubular crystals. J Mol Biol 383 : 252-265. Pub Med
  56. Wu SR, Haag L, Hammar L, Wu B, Garoff H, Xing L, Murata K, & Cheng RH (2007) The dynamic envelope of a fusion class II virus. Prefusion stages of semliki forest virus revealed by electron cryomicroscopy. J Biol Chem 282: 6752-6762. Pub Med
  57. Okamoto K, Narayanan R, Lee SH, Murata K, & Hayashi Y (2007) The role of CaMKII as an F-actin-bundling protein crucial for maintenance of dendritic spine structure. Proc Natl Acad Sci U S A 104 : 6418-6423. Pub Med
  58. Kim MJ, McNally B, Murata K, & Meller A (2007) Characteristics of Solid-state Nanometer Pores Fabricated Using Transmission Electron Microscope (TEM). Nanotechnology 18 : 205302-205306.
  59. 村田和義(2002)実験の原理から理解するバイオの基礎 これからのバイオインフォマティクスのためのバイオ実験入門 電子顕微鏡 : 203-204. 羊土社
  60. Murata K, Odahara N, Kuniyasu A, Sato Y, Nakayama H, & Nagayama K (2001) Asymmetric arrangement of auxiliary subunits of skeletal muscle voltage-gated l-type Ca2+ channel. Biochem Biophys Res Commun 282 : 284-291. Pub Med
  61. Murata K, Mitsuoka K, Hirai T, Walz T, Agre P, Heymann JB, Engel A & Fujiyoshi Y. (2001) Molecular basis of water selectivity on aquaporin-1. Kidney Int 60 : 399-399.
  62. Schmidt Krey I, Mitsuoka K, Hirai T, Murata K, Cheng Y, Fujiyoshi Y, Morgenstern & R, Hebert H (2000) The three-dimensional map of microsomal glutathione transferase 1 at 6 A resolution. EMBO J 19 : 6311-6316. Pub Med
  63. Murata K, Okamoto M, & Suzaki T (2000) Morphological change of cell membrane-integrated crystalline structure induced by cell shape change in Euglena gracilis. Protoplasma 214 : 73-79.
  64. Murata K, Mitsuoka K, Hirai T, Walz T, Agre P, Heymann JB, Engel A, & Fujiyoshi Y (2000) Structural determinants of water permeation through aquaporin-1. Nature 407 : 599-605. Pub Med
  65. Schmidt Krey I, Murata K, Hirai T, Mitsuoka K, Cheng Y, Morgenstern R, Fujiyoshi Y, & Hebert H (1999) The projection structure of the membrane protein microsomal glutathione transferase at 3 A resolution as determined from two-dimensional hexagonal crystals. J Mol Biol 288 : 243-253. Pub Med
  66. Mitsuoka K, Murata K, Walz T, Hirai T, Agre P, Heymann JB, Engel A, & Fujiyoshi Y (1999) The structure of aquaporin-1 at 4.5-A resolution reveals short alpha-helices in the center of the monomer. J Struct Biol 128 : 34-43. Pub Med
  67. Mitsuoka K, Hirai T, Murata K, Miyazawa A, Kidera A, Kimura Y, & Fujiyoshi Y (1999) The structure of bacteriorhodopsin at 3.0 A resolution based on electron crystallography: implication of the charge distribution. J Mol Biol 286 : 861-882. Pub Med
  68. Konno T, Murata K, & Nagayama K (1999) Amyloid-like aggregates of a plant protein: a case of a sweet-tasting protein, monellin. FEBS Lett 454 : 122-126. Pub Med
  69. Hirai T, Murata K, Mitsuoka K, Kimura Y, & Fujiyoshi Y (1999) Trehalose embedding technique for high-resolution electron crystallography: application to structural study on bacteriorhodopsin. J Electron Microsc (Tokyo) 48 : 653-658. Pub Med
  70. Suzuki H, Yonekura K, Murata K, Hirai T, Oosawa K, & Namba K (1998) A structural feature in the central channel of the bacterial flagellar FliF ring complex is implicated in type III protein export. J Struct Biol 124 : 104-114. Pub Med
  71. Murata K & Suzaki T (1998) High-salt solutions prevent reactivation of euglenoid movement in detergent-treated cell models of Euglena gracillis. Protoplasma 203 : 125-129.
  72. Ikeda Yamasaki I, Odahara T, Mitsuoka K, Fujiyoshi Y, & Murata K (1998) Projection map of the reaction center-light harvesting 1 complex from Rhodopseudomonas viridis at 10 A resolution. FEBS Lett 425 : 505-508. Pub Med
  73. Heymann JB, Walz T, Hirai T, Murata K, Smith BL, Mitsuoka K, Fujiyoshi Y, Agre P & Engel A. (1998) The water channel in aquaporin-1. Biophys J 74, A123-A123.
  74. Walz T, Hirai T, Murata K, Smith BL, Typke D, Tittmann P, Fuchs K, Muller DJ, Heymann JB, Mitsuoka K, Gross H, Fujiyoshi Y, Agre P & Engel A. (1997) Three-dimensional structure of aquaporin 1 at 6 angstrom resolution. Eur J Cell Biol 74, 30-30.
  75. Walz T, Hirai T, Murata K, Heymann JB, Mitsuoka K, Fujiyoshi Y, Smith BL, Agre P, & Engel A (1997) The three-dimensional structure of aquaporin-1. Nature 387 : 624-627. Pub Med
  76. Mitsuoka K, Murata K, Kimura Y, Namba K, & Fujiyoshi Y (1997) Examination of the LeafScan 45, a line-illuminating micro-densitometer, for its use in electron crystallography. Ultramicroscopy 68 : 109-121.
  77. Kimura Y, Vassylyev D, Miyazawa A, Kidera A, Matsushima M, Mitsuoka K, Murata K, Hirai T, & Fujiyoshi Y (1997) High resolution structure of bacteriorhodopsin determined by electron crystallography. Photochem Photobiol 66 : 764-767.
  78. Kimura Y, Vassylyev DG, Miyazawa A, Kidera A, Matsushima M, Mitsuoka K, Murata K, Hirai T, & Fujiyoshi Y (1997) Surface of bacteriorhodopsin revealed by high-resolution electron crystallography. Nature 389 : 206-211. Pub Med
  79. Hebert H, Schmidt Krey I, Morgenstern R, Murata K, Hirai T, Mitsuoka K, & Fujiyoshi Y (1997) The 3.0 A projection structure of microsomal glutathione transferase as determined by electron crystallography of p 21212 two-dimensional crystals. J Mol Biol 271 : 751-758. Pub Med
  80. 村田和義、藤吉好則(1996)医学・生物学用超高圧電子顕微鏡 第7回電顕サマースクール 電子顕微鏡 基礎技術と応用1996 電子線結晶学による蛋白質の構造解析 : 239-248 日本電子顕微鏡学会
  81. 村田和義、藤吉好則(1996)蛋白質の高分解能構造解析のための試料作製法.電子顕微鏡 31 : 149-152.
  82. Mimori Y, Yamashita I, Murata K, Fujiyoshi Y, Yonekura K, Toyoshima C, & Namba K (1995) The structure of the R-type straight flagellar filament of Salmonella at 9 A resolution by electron cryomicroscopy. J Mol Biol 249 : 69-87. Pub Med
  83. Knoblich A, Matsumoto M, Murata K, Fujiyoshi Y (1995) Cryogenic transmission electron microscopic studies for micellar structure correlated with solution viscosity on perfluorooctyl sufonates and their mixtures with a nonionic surfactant. Langmuir 11 : 2361-2366.
  84. Knoblich A, Matsumoto M, Ishiguro R, Murata K, Fujiyoshi Y, Ishigami Y, & Osman M (1995) Electron cryo-microscopic studies on micellar shape and size of surfactin, an anionic lipopeptide. Colloids and Surfaces B: Biointerfaces 5 : 43-48.
  85. Yamanaka K, Ogura T, Murata K, Suzaki T, Niki H, & Hiraga S (1994) Characterization of translucent segments observed in an smbA mutant of Escherichia coli. FEMS Microbiol Lett 116 : 61-66. Pub Med
  86. Tomoyasu T, Yamanaka K, Murata K, Suzaki T, Bouloc P, Kato A, Niki H, Hiraga S, & Ogura T (1993) Topology and subcellular localization of FtsH protein in Escherichia coli. J Bacteriol 175 : 1352-1357. Pub Med